Qatar Airways allows hand luggage of 50x37x25cm (20x15x10in) and 7Kg, have you measured the case? I flew with Qatar Airways in April from Manchester>Doha>bangkok with my Phantom 2 in an Ebay special backpack - http://www.ebay.co.uk/itm/Delux-Black-Case-Shoulder-Carry-Backpack-Bag-for-Drone-quadcopter-DJI-Phantom-3- - as hand luggage and had no issues. ( even did internal flights in Thailand with it.
Not sure about cover for baggage damage though..
Remember to buy extra propellers and one or two spare batteries to keep you flying
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